Data & Analytics
Clinical Decision-Support Research & Evaluation Artifacts
Builds and validates research-only CDS artifacts—GRADE evidence profiles, aggregate cohort tables, survival plans, model/biomarker evaluations, and de-identification checklists—with a hard no-patient-care boundary.
Analytical Method Validation (AMV)
Picks the governing framework (ICH Q2(R2)/M10, USP, CLSI, ISO 17025), then plans the validation study, runs the correct statistics, and structures the protocol and report.
French Statutory Auditor (CAC) AI
Runs a French statutory-audit program (NEP, 7 phases) over annual accounts and issues a structured audit opinion report.
French Tax Audit Simulator (DGFIP)
Acts as a French DGFIP tax inspector, auditing a company's books across 9 axes and issuing a reassessment report with legal grounds and penalty estimates.
Agent Cost Report
Turns Claude Code transcript tokens into a manager-readable cost report (HTML/PDF/CSV/JSON) showing cost per completed outcome and what mistakes cost.
Arboreto Gene Regulatory Network Inference
Guides Claude to infer transcription factor–target gene networks from expression data using arboreto's GRNBoost2 and GENIE3.
PyDESeq2 Differential Expression
An end-to-end guide for bulk RNA-seq differential expression with PyDESeq2 — formulaic designs, Wald tests, FDR correction, LFC shrinkage, and plots.
DiffDock Molecular Docking Skill
Runs DiffDock/DiffDock-L to predict protein–small-molecule binding poses and interprets the confidence scores.
OpenPIV Flow Field Analysis
Extract, validate and post-process velocity fields from PIV image pairs, including vorticity, strain rate and turbulence statistics.
Rowan Molecular Modeling Workflows
A skill that drives Rowan's cloud chemistry API to run pKa prediction, docking, conformer/tautomer searches, and protein–ligand cofolding from code.
Glycoengineering Analysis
Scans protein sequences for N-/O-glycosylation sites and guides glycan engineering strategies for antibodies and vaccine antigens.
OneKGPd — Individual-Level 1000 Genomes Queries
A Claude skill for querying the 1000 Genomes Project cohort (3,202 whole genomes, GRCh38) at the level of individual participants and variants.
RELSA Severity Assessment & Humane Endpoint Forecasting
Combines lab-animal welfare readouts into a single RELSA severity score and forecasts humane endpoints with ARIMA plus KDE-derived severity zones.
NeuroKit2 Physiological Signal Workflow
A research-grade skill for building and auditing reproducible ECG/EDA/RSP pipelines with NeuroKit2 0.2.13.
CELLxGENE Census Data Querying
Guides Claude to query and analyze the 200M+ cell CZ CELLxGENE Census of public single-cell and spatial transcriptomics data without downloading full datasets.
NCATS ARAX Biomedical Knowledge-Graph Lookup
Runs bounded one-hop and endpoint-pinned two-hop TRAPI queries against the NCATS Translator ARAX API and returns typed, provenance-rich biomedical relationships.
LaminDB Bio Data Lakehouse Assistant
Guides Claude through LaminDB artifact registration, querying, validation, ontology annotation, and lineage tracking.
scVelo RNA Velocity Analysis
Guides Claude through a full scVelo RNA velocity pipeline — cell state transitions, latent time, and driver genes from spliced/unspliced scRNA-seq counts.