Drafts and validates research-only CDS artifacts — intended-use statements, GRADE evidence profiles, aggregate cohort tables, survival plans, model evaluations, and privacy/governance checklists.
Turns SMILES structures into ML-ready feature vectors using 100+ featurizers such as ECFP, MACCS, descriptors and ChemBERTa embeddings.
A skill that guides Claude through LaminDB artifact registration, querying, lineage tracking, and ontology-backed validation for biological data.
A guardrailed guide for using gtars across Python, Rust, and the CLI for BED set algebra, coverage, consensus, tokenization, and refget.
Tracks physical units with pint and propagates measurement uncertainty via GUM and Monte Carlo, with local CLIs for budgets, reporting, code audits, and plausibility checks.
Opinionated GeoPandas guidance plus local audit CLIs for CRS, geometry validity, spatial joins, and safe exports.
A PathML 3.0.5 playbook for loading and tiling whole-slide images, building preprocessing/QC pipelines, validating spatial graphs, and planning bounded local inference.
Runs tightly constrained one-hop and endpoint-pinned two-hop queries against the NCATS Translator ARAX API, returning typed relationships with full provenance.
A rigorous skill for planning, validating, restarting, and analyzing FluidSim computational fluid dynamics runs.
An end-to-end PyMC skill covering hierarchical model building, NUTS sampling, convergence diagnostics, and LOO/WAIC model comparison.
A ready-to-run skill for processing, quantifying, and annotating proteomics and metabolomics LC-MS/MS data with pyOpenMS.
Combines body weight, temperature, clinical scores and biomarkers into a single RELSA severity score, then forecasts humane endpoints with ARIMA.
Triage compound libraries with medicinal chemistry rules (Lipinski, PAINS, NIBR) and the medchem query language.
Simulate and audit closed and open quantum systems with QuTiP 5.3, with explicit physical assumptions and convergence checks.
A Geniml-focused skill that validates BED/universe contracts and plans Region2Vec, scEmbed, and consensus-universe runs with an audit-first mindset.
Analyze, validate, convert, and transform crystal structures and computed materials data with reproducible, provenance-preserving pymatgen workflows.
Equips Claude Code to run FBA, FVA, knockout screens, and flux sampling on genome-scale metabolic models with COBRApy.
End-to-end Neuropixels extracellular analysis with SpikeInterface: loading, preprocessing, drift correction, spike sorting, quality metrics and unit curation.
Query the 1000 Genomes Project cohort (3,202 genomes, GRCh38) at the level of individual participants and variants.
An end-to-end phylogenetics pipeline: MAFFT alignment, IQ-TREE 2 / FastTree ML inference, and ETE3 tree analysis and plotting.