Set up, run, and analyze protein/ligand MD simulations end-to-end with OpenMM and MDAnalysis.
Design, build, and audit truthful, accessible, publication-ready scientific figures with Matplotlib, Seaborn, or Plotly.
Guides Claude to infer transcription factor–target gene networks from expression data using arboreto's GRNBoost2 and GENIE3.
Look up precomputed AlphaGenome Atlas AVI scores and call the AlphaGenome model on demand to rank and mechanistically interpret non-coding regulatory SNVs.
Runs bounded one-hop and endpoint-pinned two-hop TRAPI queries against the NCATS Translator ARAX API and returns typed, provenance-rich biomedical relationships.
A research-grade skill for building and auditing reproducible ECG/EDA/RSP pipelines with NeuroKit2 0.2.13.
Guides Claude to query and analyze the 200M+ cell CZ CELLxGENE Census of public single-cell and spatial transcriptomics data without downloading full datasets.
Guides Claude through LaminDB artifact registration, querying, validation, ontology annotation, and lineage tracking.
A Claude skill for querying the 1000 Genomes Project cohort (3,202 whole genomes, GRCh38) at the level of individual participants and variants.
Guides Claude through a full scVelo RNA velocity pipeline — cell state transitions, latent time, and driver genes from spliced/unspliced scRNA-seq counts.
A skill that guides you through defining single-, multi-, and many-objective problems in pymoo, computing Pareto fronts, and picking a final solution.
An expert skill for building, tuning, evaluating, and reporting right-censored and competing-risk survival models with scikit-survival, without data leakage.
A research-only skill for using PathML 3.0.5 to tile slides, build preprocessing/QC pipelines, quantify multiplex images, construct spatial graphs, and plan bounded local inference.
Simulate and audit closed and open quantum systems with QuTiP 5.3, making units, dimensions, and numerical convergence explicit.
A disciplined workflow for PyTDC 1.1.15: metadata-first discovery, approval-gated dataset downloads, task-aware splits, exact evaluator names, benchmark groups, and bounded molecular oracles.
Runs the standard phylogenetics workflow — MAFFT alignment, IQ-TREE 2/FastTree inference, and ETE3 tree analysis and rendering.
Plans, audits, and cost-bounds ChicagoHAI HypoGeniC/HypoRefine hypothesis-generation runs entirely locally before any LLM call.
Triage compound libraries with drug-likeness rules (Lipinski, Veber, CNS), PAINS/NIBR structural alerts, complexity metrics, and the medchem query language.
Scans protein sequences for N-/O-glycosylation sites and guides glycan engineering strategies for antibodies and vaccine antigens.
A rigorous workflow skill for planning, validating, restarting, and analyzing FluidSim 0.9 pseudospectral CFD runs with explicit numerical and HPC safety gates.