All skills

A skill that guides you through defining single-, multi-, and many-objective problems in pymoo, computing Pareto fronts, and picking a final solution.

Guides Claude to query and analyze the 200M+ cell CZ CELLxGENE Census of public single-cell and spatial transcriptomics data without downloading full datasets.

Formats and structurally validates treatment-plan documentation for decisions already made and verified by licensed clinicians — fully offline.

Combines lab-animal welfare readouts into a single RELSA severity score and forecasts humane endpoints with ARIMA plus KDE-derived severity zones.

Guides Claude through the `esm` Python SDK — ESM3 generation, ESM C embeddings, ESMFold2 folding, and Forge/Biohub hosted inference.

Guides Claude to build, register, debug, and run bioinformatics workflows on the Latch platform via the Python SDK, CLI, Nextflow, Snakemake, and Latch MCP.

A disciplined workflow for PyTDC 1.1.15: metadata-first discovery, approval-gated dataset downloads, task-aware splits, exact evaluator names, benchmark groups, and bounded molecular oracles.

Run open-source structural biology and molecular design tools (AlphaFold, Boltz, RFdiffusion, DiffDock…) on Tamarind Bio's managed GPUs via its REST API or MCP server.

Simulate and audit closed and open quantum systems with QuTiP 5.3, making units, dimensions, and numerical convergence explicit.

Guides Claude through a full scVelo RNA velocity pipeline — cell state transitions, latent time, and driver genes from spliced/unspliced scRNA-seq counts.

A skill for safely integrating with the LabArchives ELN and Inventory v1 APIs, covering HMAC signing, regional endpoints and security guardrails.

Guides Claude through LaminDB artifact registration, querying, validation, ontology annotation, and lineage tracking.

A research-grade skill for building and auditing reproducible ECG/EDA/RSP pipelines with NeuroKit2 0.2.13.

A Claude skill for querying the 1000 Genomes Project cohort (3,202 whole genomes, GRCh38) at the level of individual participants and variants.

Moves CPU-bound scientific Python to NVIDIA GPUs and proves the port is both correct and genuinely faster.

Extract, validate and post-process velocity fields from PIV image pairs, including vorticity, strain rate and turbulence statistics.

Validates inputs, generates pacsomatic samplesheets and launch artifacts, then runs or submits nf-core/pacsomatic tumor-normal analyses locally or on HPC schedulers.

An end-to-end guide for bulk RNA-seq differential expression with PyDESeq2 — formulaic designs, Wald tests, FDR correction, LFC shrinkage, and plots.

A skill that drives Rowan's cloud chemistry API to run pKa prediction, docking, conformer/tautomer searches, and protein–ligand cofolding from code.

A skill that guides building, training, and deploying differentiable quantum circuits with PennyLane.