Data & Analytics

Read, inspect, and write flow cytometry FCS 2.0/3.0/3.1 files correctly with FlowIO 1.4.0.

A disciplined workflow for PyTDC 1.1.15: metadata-first discovery, approval-gated dataset downloads, task-aware splits, exact evaluator names, benchmark groups, and bounded molecular oracles.

Simulate and audit closed and open quantum systems with QuTiP 5.3, making units, dimensions, and numerical convergence explicit.

Guides Claude through a full scVelo RNA velocity pipeline — cell state transitions, latent time, and driver genes from spliced/unspliced scRNA-seq counts.

A guide skill for turning SMILES into 100+ ML-ready features with molfeat — ECFP, MACCS, descriptors and ChemBERTa embeddings.

Guides Claude through LaminDB artifact registration, querying, validation, ontology annotation, and lineage tracking.

A research-grade skill for building and auditing reproducible ECG/EDA/RSP pipelines with NeuroKit2 0.2.13.

A Claude skill for querying the 1000 Genomes Project cohort (3,202 whole genomes, GRCh38) at the level of individual participants and variants.

Extract, validate and post-process velocity fields from PIV image pairs, including vorticity, strain rate and turbulence statistics.

Query the PrimeKG biomedical knowledge graph — genes, drugs, diseases, phenotypes — straight from Claude Code.

An end-to-end guide for bulk RNA-seq differential expression with PyDESeq2 — formulaic designs, Wald tests, FDR correction, LFC shrinkage, and plots.

A skill that drives Rowan's cloud chemistry API to run pKa prediction, docking, conformer/tautomer searches, and protein–ligand cofolding from code.

A skill that guides building, training, and deploying differentiable quantum circuits with PennyLane.

A guide for doing molecular work with RDKit — parsing SMILES/SDF, descriptors, fingerprints, substructure search, reactions, and 2D/3D coordinates.

A research-only skill for using PathML 3.0.5 to tile slides, build preprocessing/QC pipelines, quantify multiplex images, construct spatial graphs, and plan bounded local inference.

Guides Claude to analyze, edit, compare, annotate, and visualize existing phylogenetic trees with ETE 4.4.0.

Plans, audits, and cost-bounds ChicagoHAI HypoGeniC/HypoRefine hypothesis-generation runs entirely locally before any LLM call.

Triage compound libraries with drug-likeness rules (Lipinski, Veber, CNS), PAINS/NIBR structural alerts, complexity metrics, and the medchem query language.

A skill for cleaning, filtering, comparing, and library-searching MS/MS spectra with the current matchms 0.33.1 API.

An end-to-end SpikeInterface workflow for Neuropixels recordings: loading, preprocessing, drift correction, spike sorting, quality metrics, and unit curation.