Data & Analytics

Simulate and audit closed and open quantum systems with QuTiP 5.3, making units, dimensions, and numerical convergence explicit.

Guides Claude through a full scVelo RNA velocity pipeline — cell state transitions, latent time, and driver genes from spliced/unspliced scRNA-seq counts.

A guide skill for running DeepSpot-M to predict transcriptome-wide spatial gene expression from H&E histology tiles.

A research-grade skill for building and auditing reproducible ECG/EDA/RSP pipelines with NeuroKit2 0.2.13.

A Claude skill for querying the 1000 Genomes Project cohort (3,202 whole genomes, GRCh38) at the level of individual participants and variants.

Extract, validate and post-process velocity fields from PIV image pairs, including vorticity, strain rate and turbulence statistics.

An end-to-end guide for bulk RNA-seq differential expression with PyDESeq2 — formulaic designs, Wald tests, FDR correction, LFC shrinkage, and plots.

A skill that drives Rowan's cloud chemistry API to run pKa prediction, docking, conformer/tautomer searches, and protein–ligand cofolding from code.

A skill that guides building, training, and deploying differentiable quantum circuits with PennyLane.

A skill for storing, ingesting, querying and exporting VCF/BCF variant data on TileDB sparse arrays for population genomics.

A research-only skill for using PathML 3.0.5 to tile slides, build preprocessing/QC pipelines, quantify multiplex images, construct spatial graphs, and plan bounded local inference.

Guides Claude to analyze, edit, compare, annotate, and visualize existing phylogenetic trees with ETE 4.4.0.

Plans, audits, and cost-bounds ChicagoHAI HypoGeniC/HypoRefine hypothesis-generation runs entirely locally before any LLM call.

Triage compound libraries with drug-likeness rules (Lipinski, Veber, CNS), PAINS/NIBR structural alerts, complexity metrics, and the medchem query language.

A skill for cleaning, filtering, comparing, and library-searching MS/MS spectra with the current matchms 0.33.1 API.

Safely inspect, export, and plan microscopy data workflows on an OMERO.server using omero-py, the OMERO CLI, and bounded dry-run helpers.

A step-by-step playbook for converting existing PostgreSQL tables into TimescaleDB hypertables with optimal chunking, compression, and post-migration validation.

Look up, score, and mechanistically interpret regulatory and splicing effects of SNVs using DeepMind's AlphaGenome model and the AlphaGenome Atlas.

Estimates intracellular fluxes from steady-state carbon-13 labeling data and tells you which fluxes the experiment actually constrains.

A judgment-layer rulebook you load before drawing any chart or dashboard: it decides whether the chart should exist at all.